=============================================================================== As filed with the Securities and Exchange Commission on May 13, 2004 REGISTRATION NO. 333 - UNITED STATES SECURITIES AND EXCHANGE COMMISSION WASHINGTON, D.C. 20549 --------------- FORM S-8 REGISTRATION STATEMENT UNDER THE SECURITIES ACT OF 1933 --------------- VERTEX PHARMACEUTICALS INCORPORATED (EXACT NAME OF REGISTRANT AS SPECIFIED IN ITS CHARTER) MASSACHUSETTS 04-3039129 (STATE OR OTHER JURISDICTION (I.R.S. EMPLOYER OF INCORPORATION OR ORGANIZATION) IDENTIFICATION NO.) 130 WAVERLY STREET CAMBRIDGE, MASSACHUSETTS 01239-4242 (ADDRESS, INCLUDING ZIP CODE, OF PRINCIPAL EXECUTIVE OFFICES) EMPLOYEE STOCK PURCHASE PLAN (FULL TITLE OF THE PLAN) JOSHUA S. BOGER, PH.D. CHAIRMAN AND CHIEF EXECUTIVE OFFICER VERTEX PHARMACEUTICALS INCORPORATED 130 WAVERLY STREET CAMBRIDGE, MASSACHUSETTS 02139-4242 (617) 444-6100 (NAME, ADDRESS AND TELEPHONE NUMBER, INCLUDING AREA CODE, OF AGENT FOR SERVICE) --------------- CALCULATION OF REGISTRATION FEE =============================== =================== ===================== =========================== =========================== Proposed Proposed Title of Amount to be Maximum Maximum Securities to be Registered Registered(1) Offering Price Aggregate Amount of Per Share (2) Offering Price (2) Registration Fee - ------------------------------- ------------------- --------------------- --------------------------- --------------------------- Common Stock, $.01 par value 1,500,000 shares $8.82 $13,230,000 $1,677 =============================== =================== ===================== =========================== =========================== Rights to purchase Series A (3) (3) (3) None Junior Participating Preferred Stock =============================== =================== ===================== =========================== =========================== (1) The number of shares of common stock, par value $.01 per share ("Common Stock"), stated above consists of the aggregate number of shares which may be sold under the Employee Stock Purchase Plan (the "Plan"). The maximum number of shares which may be sold upon the exercise of options granted under the Plan are subject to adjustment in accordance with certain anti-dilution and other provisions of the Plan. Accordingly, pursuant to Rule 416 under the Securities Act of 1933, as amended (the "Securities Act"), this Registration Statement covers, in addition to the number of shares stated above, an indeterminate number of shares which may be subject to grant or otherwise issuable after the operation of any such anti-dilution and other provisions. (2) This calculation is made solely for the purpose of determining the registration fee pursuant to the provisions of Rule 457(c) and (h) under the Securities Act as follows: because the purchase price of the shares is not yet known, the fee is calculated on the basis of the average of the high and low sale prices per share of the Common Stock on the Nasdaq Stock Market as of a date (May 7, 2004) within five business days prior to filing this Registration Statement. (3) No separate consideration will be received for the Rights. ===============================================================================

EXPLANATORY NOTE In accordance with the instructional Note to Part I of Form S-8 as promulgated by the Securities and Exchange Commission, the information specified by Part I of Form S-8 has been omitted from this Registration Statement on Form S-8 for offers of Common Stock pursuant to the Plan.

PART II INFORMATION REQUIRED IN THE REGISTRATION STATEMENT ITEM 3. INCORPORATION OF CERTAIN DOCUMENTS BY REFERENCE. - -------------------------------------------------------- The following documents filed by the Registrant with the Commission are incorporated herein by reference: (a) The Registrant's Annual Report on Form 10-K for the fiscal year ended December 31, 2003 (filing date March 15, 2004). (b) The Registrant's Quarterly Report on Form 10-Q for the fiscal quarter ended March 31, 2004 (filing date May 10, 2004). (c) The following Current Reports of the Registrant on Form 8-K, except that information furnished under either Item 9 or Item 12 is not incorporated by reference: (i) Current Report on Form 8-K filed February 3, 2004 (ii) Current Report on Form 8-K filed February 10, 2004 (iii) Current Report on Form 8-K filed February 13, 2004 (iv) Current Report on Form 8-K filed February 23, 2004 (v) Current Report on Form 8-K filed May 10, 2004 (d) The description of the Common Stock contained in the Registrant's Registration Statement on Form S-4 (Reg. No. 333-61480) filed under the Securities Act of 1933, including any amendment or report filed for the purpose of updating such description. (e) The description of the Rights under the Registrant's Rights Agreement (which are currently transferred with the Registrant's Common Stock) contained in the Registrant's Registration Statement on Form S-4 (No. 333-61480) filed under the Securities Act of 1933, including any amendment or report filed for the purpose of updating such description. All reports and other documents filed by the Registrant after the date hereof pursuant to Sections 13(a), 13(c), 14 and 15(d) of the Exchange Act prior to the filing of a post-effective amendment which indicates that all securities offered hereby have been sold or which deregisters all securities then remaining unsold, shall be deemed to be incorporated by reference herein and to be part hereof from the date of filing of such reports and documents. ITEM 4. DESCRIPTION OF SECURITIES. - ---------------------------------- Not applicable. ITEM 5. INTERESTS OF NAMED EXPERTS AND COUNSEL. - ----------------------------------------------- Not applicable. ITEM 6. INDEMNIFICATION OF DIRECTORS AND OFFICERS. - -------------------------------------------------- Part D of Article 6 of the Restated Articles of Organization of the Registrant provides that no director of the Registrant shall be personally liable to the Registrant or its stockholders for monetary damages for breach of fiduciary duty as a director. Such paragraph provides further, however, that, to the extent provided by applicable law, it will not eliminate or limit the liability of a director (i) for any breach of the director's duty of loyalty to the Registrant or its stockholders, (ii) for acts or omissions not in good faith or which involve intentional misconduct or a knowing violation of law, (iii) for distributions made in violation of the Registrant's Restated Articles of Organization or which are made when the Registrant is insolvent or which renders it insolvent, (iv) for loans made to officers or directors of the Registrant which are not repaid if the director has voted for such loans and they have not been approved or ratified as loans 1

reasonably expected to benefit the Registrant, by a majority of directors who are not recipients of such loans or the holders of a majority of voting shares, which holders are not recipients of such loans, and (v) for any transactions from which the director derived an improper personal benefit. Article V of the Registrant's By-laws provides that the Registrant shall indemnify each of its directors and officers (including persons who serve at the Registrant's request as a director, officer or trustee of another organization in which the Registrant has any interest, direct or indirect, as a stockholder, creditor or otherwise or who serve at the Registrant's request in any capacity with respect to any employee benefit plan) against all liabilities and expenses, including amounts paid in satisfaction of judgments, in compromise or as fines and penalties and counsel fees reasonably incurred by such directors or officer in connection with the defense or disposition of any action, suit or other proceeding, whether civil or criminal, in which such director or officer may be involved or with which such person may be threatened, while in office or thereafter, by reason of such person's being or having been such a director, officer or trustee, except with respect to any matter as to which such director or officer shall have been adjudicated in any proceeding not to have acted in good faith in the reasonable belief that such director's or officer's action was in the best interest of the Registrant or, to the extent that such matter relates to service with respect to an employee benefit plan, in the best interest of the participants or beneficiaries of such employee benefit plan. As to any matter disposed of by a compromise payment by any such person, pursuant to a consent decree or otherwise, Article V of the Registrant's By-laws provides that no indemnification shall be provided to such person for such payment or for any other expenses unless such compromise has been approved as in the best interest of the Registrant, after notice that it involves such indemnification (i) by a disinterested majority of the directors then in office, (ii) by a majority of the disinterested directors then in office, provided there has been obtained an opinion in writing of independent legal counsel to the effect that such director or officer appears to have acted in good faith in the reasonable belief that such person's action was in the best interest of the Registrant, or (iii) by the holders of a majority of the outstanding stock at the time entitled to vote for directors, voting as a single class, exclusive of any stock owned by any interested director or officer. Article V of the Registrant's By-laws provides that expenses, including counsel fees, reasonably incurred by any director or officer in connection with the defense or disposition of any such action, suit or other proceeding may be paid from time to time by the Registrant at the discretion of a majority of the disinterested directors then in office, in advance of the final disposition thereof, upon receipt of an undertaking by such director or officer to repay the Registrant the amounts so paid if it is ultimately determined that indemnification for such expenses is not authorized under Article V of the By-laws, which undertaking may be accepted by the Registrant without reference to the financial ability of such director or officer to make repayment. Article V of the Registrant's By-laws gives the Board of Directors of the Registrant the power to authorize the purchase and maintenance of insurance, in such amounts as the Board of Directors may from time to time deem appropriate, on behalf of any person who is or was a director, officer or agent of the Registrant, or who is or was serving at the request of the Registrant as a director, officer or agent of another organization in which the Registrant has any interest, direct or indirect, as a shareholder, creditor or otherwise, or with respect to any employee benefit plan, against any liability incurred by such person in any such capacity, or arising out of such person's status as such agent, whether or not such person is entitled to indemnification by the Registrant pursuant to Article V or otherwise and whether or not the Registrant would have the power to indemnify the person against such liability. 2

Section 13(b)(1 1/2) of the Massachusetts Business Corporation Law, Chapter 156B of the General Laws of Massachusetts (the "MBCL") authorizes the provisions, described above, contained in Part D of Article 6 of the Restated Articles of Organization of the Registrant. Section 67 of the MBCL authorizes the provisions, described above, contained in Article V of the By-laws of the Registrant. Section 65 of the MBCL provides that performance by a director, officer or incorporator of such person's duties in good faith and in a manner such person reasonably believes to be in the best interest of the corporation, and with such care as an ordinary prudent person in a like position would use under similar circumstances, shall be a complete defense to any claim asserted against such director, officer or incorporator, except as otherwise expressly provided by statute, by reason of such person's being or having been a director, officer or incorporator of the corporation. ITEM 7. EXEMPTION FROM REGISTRATION CLAIMED. - -------------------------------------------- Not applicable. ITEM 8. EXHIBITS. - ----------------- (4.1) Specimen Common Stock Certificate (filed as Exhibit 4.1 to Registrant's Registration Statement on Form S-1, as amended, No. 33-40966, and incorporated herein by reference). (4.2) Restated Articles of Organization of the Registrant (filed as Exhibit 3.1 to Registrant's Registration Statement on Form S-4, as amended, No. 333-61480, and incorporated herein by reference). (4.3) By-Laws of the Registrant, as amended and restated (filed as Exhibit 3.5 to Registrant's Registration Statement on Form S-4, as amended, No. 333-61480, and incorporated herein by reference). (4.4) Stockholder Rights Plan (filed as Exhibit 4.2 to Registrant's Registration Statement on Form S-1, as amended, No. 33-40966, and incorporated herein by reference). (4.5) First Amendment to Rights Agreement dated as of February 21, 1997 (filed as Exhibit 4.3 to Registrant's 1996 Annual Report on Form 10-K, file No. 000-19319, and incorporated herein by reference). (4.6) Second Amendment to Rights Agreement dated as of June 30, 2001 (filed as Exhibit 4.4 to Registrant's Quarterly Report on Form 10-Q for the quarter ended June 30, 2001, file No. 000-19319, and incorporated herein by reference). (5) Opinion of Mintz, Levin, Cohn, Ferris, Glovsky and Popeo, P.C. as to the legality of shares being registered. (23.1) Consent of Mintz, Levin, Cohn, Ferris, Glovsky and Popeo, P.C. (included in opinion of counsel filed as Exhibit 5). (23.2) Consent of Independent Accountants, PricewaterhouseCoopers LLP. 3

(24) Power of Attorney to file future amendments (set forth on the signature page of this Registration Statement). (99.1) Employee Stock Purchase Plan, Amended and Restated as of May 6, 2004. ITEM 9. UNDERTAKINGS. - --------------------- (a) The undersigned Registrant hereby undertakes: (1) To file, during any period in which offers or sales are being made, a post-effective amendment to this Registration Statement: (i) To include any prospectus required by Section 10(a)(3) of the Securities Act of 1933; (ii) To reflect in the prospectus any facts or events arising after the effective date of the Registration Statement (or the most recent post-effective amendment thereof) which, individually or in the aggregate, represents a fundamental change in the information set forth in the Registration Statement. Notwithstanding the foregoing, any increase or decrease in volume of securities offered (if the total dollar value of securities offered would not exceed that which was registered) and any deviation from the low or high end of the estimated maximum offering range may be reflected in the form of prospectus filed with the Commission pursuant to Rule 424(b) if, in the aggregate, the changes in volume and price represent no more than a 20% change in the maximum aggregate offering price set forth in the "Calculation of Registration Fee" table in the effective Registration Statement; (iii) To include any material information with respect to the plan of distribution not previously disclosed in the Registration Statement or any material change to such information in the Registration Statement; PROVIDED, HOWEVER, that paragraphs (a)(1)(i) and (a)(1)(ii) do not apply if the Registration Statement is on Form S-3, Form S-8 or Form F-3, and the information required to be included in a post-effective amendment by those paragraphs is contained in periodic reports filed with or furnished to the Commission by the Registrant pursuant to Section 13 or Section 15(d) of the Securities Exchange Act of 1934 that are incorporated by reference in this Registration Statement. (2) That, for the purpose of determining any liability under the Securities Act of 1933, each such post-effective amendment shall be deemed to be a new registration statement relating to the securities offered therein, and the offering of such securities at that time shall be deemed to be the initial bona fide offering thereof. (3) To remove from registration by means of a post-effective amendment any of the securities being registered which remain unsold at the termination of the offering. 4

(b) The undersigned Registrant hereby undertakes that, for purposes of determining any liability under the Securities Act of 1933, each filing of the Registrant's annual report pursuant to Section 13(a) or Section 15(d) of the Securities Exchange Act of 1934 that is incorporated by reference in this Registration Statement shall be deemed to be a new registration statement relating to the securities offered therein, and the offering of such securities at that time shall be deemed to be the initial bona fide offering thereof. (c) Insofar as indemnification for liabilities arising under the Securities Act of 1933 may be permitted to directors, officers and controlling persons of the Registrant pursuant to the foregoing provisions, or otherwise, the Registrant has been advised that in the opinion of the Securities and Exchange Commission such indemnification is against public policy as expressed in the Act and is, therefore, unenforceable. In the event that a claim for indemnification against such liabilities (other than the payment by the Registrant of expenses incurred or paid by a director, officer or controlling person of the Registrant in the successful defense of any action, suit or proceeding) is asserted by such director, officer or controlling person in connection with the securities being registered, the Registrant will, unless in the opinion of its counsel the matter has been settled by controlling precedent, submit to a court of appropriate jurisdiction the question whether such indemnification by it is against public policy as expressed in the Act and will be governed by the final adjudication of such issue. 5

SIGNATURES THE REGISTRANT. Pursuant to the requirements of the Securities Act of 1933, the Registrant certifies that it has reasonable grounds to believe that it meets all of the requirements for filing on Form S-8 and has duly caused this Registration Statement to be signed on its behalf by the undersigned, thereunto duly authorized, in Cambridge, Massachusetts on May 13, 2004. VERTEX PHARMACEUTICALS INCORPORATED By /S/ JOSHUA S. BOGER ------------------------------------ JOSHUA S. BOGER CHIEF EXECUTIVE OFFICER Each person whose signature appears below constitutes and appoints Joshua S. Boger and Valerie L. Andrews, and each of them singly, his/her true and lawful attorneys-in-fact and agents, with full power of substitution and resubstitution in each of them singly, for him/her and in his/her name, place and stead, and in any and all capacities, to sign any and all amendments (including post-effective amendments) to this Registration Statement on Form S-8 of Vertex Pharmaceuticals Incorporated, and to file the same, with all exhibits thereto and other documents in connection therewith, with the Securities and Exchange Commission, granting to the attorneys-in-fact and agents, and each of them, full power and authority to do and perform each and every act and thing requisite or necessary to be done in or about the premises, as full to all intents and purposes as he/she might or could do in person, hereby ratifying and confirming all that the attorneys-in-fact and agents or any of each of them or their substitute may lawfully do or cause to be done by virtue hereof. Pursuant to the requirements of the Securities Act of 1933, this Registration Statement has been signed by the following persons in the capacities and on the dates indicated. SIGNATURE TITLE DATE /S/ JOSHUA S. BOGER Director , Chairman May 13, 2004 - ------------------------------------ and Chief Executive Officer Joshua S. Boger (principal executive officer) /S/ IAN F. SMITH Chief Financial Officer May 13, 2004 - ------------------------------------ (principal financial officer) Ian F. Smith /S/ JOHANNA MESSINA POWER Controller May 13, 2004 - --------------------------- (principal accounting officer) Johanna Messina Power 6

/S/ ERIC S. BRANDT Director May 13, 2004 - --------------------------- Eric S. Brandt /S/ ROGER W. BRIMBLECOMBE Director May 13, 2004 - --------------------------- Roger W. Brimblecombe /S/ STUART J. COLLINSON Director May 13, 2004 - ------------------------------------ Stuart J. Collinson /S/ JOHN F. NIBLACK Director May 13, 2004 - ------------------------------------ John F. Niblack /S/ BRUCE I. SACHS Director May 13, 2004 - ------------------------------------ Bruce I. Sachs /S/ CHARLES A. SANDERS Director May 13, 2004 - ------------------------------------ Charles A. Sanders /S/ EVE E. SLATER Director May 13, 2004 - ------------------------------------ Eve E. Slater /S/ ELAINE S. ULLIAN Director May 13, 2004 - ------------------------------------ Elaine S. Ullian 7

VERTEX PHARMACEUTICALS INCORPORATED INDEX TO EXHIBITS FILED WITH FORM S-8 REGISTRATION STATEMENT EXHIBIT NUMBER DESCRIPTION (4.1) Specimen Common Stock Certificate (filed as Exhibit 4.1 to Registrant's Registration Statement on Form S-1, as amended, No. 33-40966, and incorporated herein by reference). (4.2) Restated Articles of Organization of the Registrant (filed as Exhibit 3.1 to Registrant's Registration Statement on Form S-4, as amended, No. 333-61480, and incorporated herein by reference). (4.3) By-Laws of the Registrant, as amended and restated (filed as Exhibit 3.5 to Registrant's Registration Statement on Form S-4, as amended, No. 333-61480, and incorporated herein by reference). (4.4) Stockholder Rights Plan (filed as Exhibit 4.2 to Registrant's Registration Statement on Form S-1, as amended, No. 33-40966, and incorporated herein by reference). (4.5) First Amendment to Rights Agreement dated as of February 21, 1997 (filed as Exhibit 4.3 to Registrant's 1996 Annual Report on Form 10-K, file No. 000-19319, and incorporated herein by reference). (4.6) Second Amendment to Rights Agreement dated as of June 30, 2001 (filed as Exhibit 4.4 to Registrant's Quarterly Report on Form 10-Q for the quarter ended June 30, 2001, file No. 000-19319, and incorporated herein by reference). (5) Opinion of Mintz, Levin, Cohn, Ferris, Glovsky and Popeo, P.C. as to the legality of shares being registered. (23.1) Consent of Mintz, Levin, Cohn, Ferris, Glovsky and Popeo, P.C. (included in opinion of counsel filed as Exhibit 5). (23.2) Consent of Independent Accountants, PricewaterhouseCoopers LLP. (24) Power of Attorney to file future amendments (set forth on the signature page of this Registration Statement). (99.1) Employee Stock Purchase Plan, Amended and Restated as of May 6, 2004. 8

Exhibit 5 Mintz, Levin, Cohn, Ferris, Glovsky and Popeo, P.C. One Financial Center Boston, Massachusetts 02111 617 542 6000 617 542 2241 FAX May 13, 2004 Vertex Pharmaceuticals Incorporated 130 Waverly Street Cambridge, Massachusetts 02139-4242 Ladies and Gentlemen: We have acted as counsel to Vertex Pharmaceuticals Incorporated, a Massachusetts corporation (the "Company"), in connection with the preparation and filing with the Securities and Exchange Commission of a Registration Statement on Form S-8 (the "Registration Statement"), pursuant to which the Company is registering the issuance under the Securities Act of 1933, as amended, of a total of 1,500,000 shares (the "Shares") of its common stock, $.01 par value per share (the "Common Stock). This opinion is being rendered in connection with the filing of the Registration Statement. All capitalized terms used herein and not otherwise defined shall have the respective meanings given to them in the Registration Statement. In connection with this opinion, we have examined the Company's Restated Articles of Organization and By-Laws, as amended and restated, both as currently in effect; such other records of the corporate proceedings of the Company and certificates of the Company's officers as we have deemed relevant; and the Registration Statement and the exhibits thereto. In our examination, we have assumed the genuineness of all signatures, the legal capacity of natural persons, the authenticity of all documents submitted to us as originals, the conformity to original documents of all documents submitted to us as certified or photostatic copies and the authenticity of the originals of such copies. Based upon the foregoing, we are of the opinion that (i) the Shares have been duly and validly authorized by the Company and (ii) the Shares, when sold, will have been duly and validly issued, fully paid and non-assessable shares of the Common Stock, free of preemptive rights. BOSTON NEW YORK RESTON WASHINGTON NEW HAVEN

MINTZ, LEVIN, COHN, FERRIS, GLOVSKY AND POPEO, P.C. May 13, 2004 Page 2 Our opinion is limited to the General Corporation Laws of the State of Massachusetts and the reported judicial decisions interpreting those laws, and we express no opinion with respect to the laws of any other jurisdiction. No opinion is expressed herein with respect to the qualification of the Shares under the securities or blue sky laws of any state or any foreign jurisdiction. We understand that you wish to file this opinion as an exhibit to the Registration Statement, and we hereby consent thereto. Very truly yours, /s/ Mintz, Levin, Cohn, Ferris, Glovsky and Popeo, P.C. Mintz, Levin, Cohn, Ferris, Glovsky and Popeo, P.C.

Exhibit 23.2 CONSENT OF INDEPENDENT ACCOUNTANTS ---------------------------------- We hereby consent to the incorporation by reference in this Registration Statement on Form S-8 of our report dated March 10, 2004 relating to the consolidated financial statements, which appears in Vertex Pharmaceuticals Incorporated's Annual Report on Form 10-K for the year ended December 31, 2003. PricewaterhouseCoopers LLP Boston, Massachusetts May 13, 2004




                                                                   Exhibit 99.1

                                                                     APPENDIX A

                      VERTEX PHARMACEUTICALS INCORPORATED
                          EMPLOYEE STOCK PURCHASE PLAN
                            (AS AMENDED AND RESTATED
                                  MAY 6, 2004)

                                   ARTICLE 1
                            PURPOSE AND DEFINITIONS

    SECTION 1.1.  PURPOSE.  The purpose of the Vertex Pharmaceuticals
Incorporated Employee Stock Purchase Plan is to provide employees with an
opportunity to purchase Common Stock in the Company through payroll
deductions, thereby encouraging employees to share in the economic growth and
success of the Company through stock ownership.

    SECTION 1.2.  DEFINITIONS.  Whenever used in the Plan, unless the context
clearly indicates otherwise, the following terms shall have the following
meanings:

    (a) "BENEFICIARY" with respect to a Participant, means the beneficiary
        designated by the Participant under the group term life insurance plan
        maintained by the Company or such other beneficiary as may be designated
        by a Participant for purposes of this Plan.

    (b) "BOARD OF DIRECTORS" means the Board of Directors of the Company.

    (c) "CODE" means the Internal Revenue Code of 1986, as the same may be
        amended from time to time, and references thereto shall include the
        valid Treasury regulations issued thereunder.

    (d) "COMMITTEE" means the Compensation Committee of the Board of Directors.

    (e) "COMMON STOCK" means shares of the $.01 par value common stock of the
        Company and any other stock or securities resulting from the adjustment
        thereof or substitution therefor as described in Section 3.4.

    (f) "COMPANY" means Vertex Pharmaceuticals Incorporated or any successor by
        merger, purchase, or otherwise.

    (g) "COMPENSATION" means the cash compensation received by an Employee for
        services, including pre-tax employee compensation made to the Company's
        401(k) savings plan, but not including overtime or bonuses.

    (h) "EFFECTIVE DATE" means July 1, 1992.

    (i) "ELECTION" means an election by a Participant to terminate an Offering
        Period on the first Purchase Date of such Offering Period, which
        election shall be made within such Offering Period and prior to such
        First Purchase Date and shall be in writing on a form furnished by the
        Company for such purpose and shall be made by having such Participant
        complete, sign and file such form with the Company in the manner
        prescribed by the Company.


                                      A-1





    (j) "EMPLOYEE" means any person who receives a regular stated compensation
        from the Company or a Subsidiary other than a pension, severance pay,
        retainer, or fee under contract.

    (k) "FAIR MARKET VALUE" of a Share of Common Stock on a particular date
        shall be the mean between the highest and lowest quoted selling prices
        on such date (the "valuation date") on the securities market where the
        Common Stock of the Company is traded, or if there were no sales on the
        valuation date, on the next preceding date within a reasonable period
        (as determined in the sole discretion of the Committee) on which there
        were sales. In the event that there were no sales in such a market
        within a reasonable period, the fair market value shall be as determined
        in good faith by the Committee in its sole discretion. The Fair Market
        Value as determined in this paragraph rounded down to the next lower
        whole cent if the foregoing calculation results in fractional cents.

    (l) "OFFERING" means the offering of shares of Common Stock to Participants
        pursuant to this Plan.

    (m) "OFFERING DATE" means each April 1 and October 1 after the Effective
        Date to and including April 1, 2004, and each May 15 and November 15
        thereafter to and including November 15, 2007, provided that the first
        Offering Date will be the Effective Date. If any such date shall fall
        other than on a business day, then the Offering Date shall be the next
        succeeding business day.

    (n) "OFFERING PERIOD" means either (i) the period from an Offering Date
        through the second Purchase Date following such Offering Date or (ii) if
        a Participant validly exercises an Election, the period from an Offering
        Date through the first Purchase Date following such Offering Date.

    (o) "PARTICIPANT" means an Employee who has elected to participate in the
        Plan.

    (p) "PURCHASE DATE" means each March 31 and September 30 to and including
        March 31, 2004, and each May 14 and November 14 thereafter.

    (q) "PLAN" means the Vertex Pharmaceuticals Incorporated Employee Stock
        Purchase Plan, an "employee stock purchase plan" within the meaning of
        Section 423(b) of the Code, together with any and all amendments
        thereto.

    (r) "STOCK PURCHASE ACCOUNT", with respect to a Participant, means the
        account established on the books and records of the Company or a
        Subsidiary for such Participant representing the payroll deductions
        credited to such account in accordance with the provisions of the Plan.

    (s) "SUBSIDIARY" means any corporation, fifty percent (50%) or more of the
        total combined voting power of all classes of stock of which is
        beneficially owned, directly or indirectly, by the Company.


                                      A-2





                                   ARTICLE II
                                 PARTICIPATION

    SECTION 2.1.  PARTICIPATION REQUIREMENTS.

    (a) COMMENCEMENT OF PARTICIPATION.  Subject to Section 2.2 and
        Section 3.2(b), each person who is an Employee on the Effective Date may
        elect, pursuant to Article IV, to become a Participant in the Plan on
        such date. Each person who becomes an Employee after the Effective Date
        may become a Participant in the Plan on the Offering Date next following
        the date on which such person becomes an Employee.

    (b) ELIGIBILITY OF FORMER PARTICIPANTS.  If a person terminates employment
        with the Company after becoming a Participant and subsequently resumes
        employment with the Company, such person will again become eligible to
        participate on the Offering Date next following such resumption of
        employment with the Company.

    SECTION 2.2.  EXCLUSIONS.  Notwithstanding any provision of the Plan to the
contrary, in no event shall the following persons be eligible to participate in
the Plan:

    (a) Any Employee whose customary employment is twenty (20) hours or less per
        week;

    (b) Any Employee whose customary employment is for not more than five
        (5) months in any calendar year; or

    (c) Any Employee who, as of the beginning of an Offering Period, owns (or
        under Section 423(b)(3) of the Code would be deemed to own) stock
        possessing five percent (5%) or more of the total combined voting power
        or value of all classes of stock of the Company or a Subsidiary.

                                  ARTICLE III
                            OFFERING OF COMMON STOCK

    SECTION 3.1.  RESERVATION OF COMMON STOCK.  The Board of Directors shall
reserve 1,748,660 shares of Common Stock for issuance under the Plan after
March 17, 2004, subject to adjustment in accordance with Section 3.4,
provided that no more than 248,660 of such shares shall be issued prior to
May 15, 2004.

    SECTION 3.2.  OFFERING OF COMMON STOCK.

    (a) GENERAL.  Subject to Section 3.2(b), each Participant in the Plan on an
        Offering Date shall be entitled to purchase shares of Common Stock on
        each Purchase Date within the Offering Period that begins with such
        Offering Date with the amounts deducted from such Participant's
        Compensation during such Offering Period pursuant to Article IV,
        provided, however, that a Participant shall not participate in more
        than one Offering Period simultaneously. The purchase price for such
        shares of Common Stock shall be determined under Section 3.3.

    (b) LIMITATIONS.  Notwithstanding Section 3.2(a), no employee may accrue
        rights to purchase shares of Common Stock attributable to an Offering
        Period in excess of $25,000 of fair market value of such shares
        (measured as of the relevant Offering Date) for each calendar year
        during which such rights are outstanding. For any year, this limit
        shall be further reduced by the fair market value of stock (measured as
        of the relevant Offering Date for such stock) purchasable


                                      A-3





        under any prior outstanding rights relating to such calendar year under
        this Plan and all other Code section 423 employee stock purchase plans
        of the Company or any Subsidiary. This paragraph is intended to be
        consistent with the limitation of Code section 423(b)(8) and shall be
        interpreted accordingly.

    SECTION 3.3.  DETERMINATION OF PURCHASE PRICE FOR OFFERED COMMON STOCK.
The purchase price per share of the shares of Common Stock to be acquired by
a Participant on a Purchase Date pursuant to an Offering shall be equal to
eighty-five (85%) of the lesser of:

    (a) the Fair Market Value of a share of Common Stock on the Offering Date
        for such Offering Period; or

    (b) the Fair Market Value of a share of Common Stock on such Purchase Date;

provided, however, in no event shall the purchase price be less than the par
value of a share of Common Stock.

    SECTION 3.4.  EFFECT OF CERTAIN TRANSACTIONS.  The number of shares of
Common Stock reserved for the Plan pursuant to Section 3.1, the maximum
number of shares of Common Stock offered pursuant to Section 3.2(b), and the
determination under Section 3.3 of the purchase price per share of the shares
of Common Stock offered to Participants pursuant to an Offering shall be
appropriately adjusted to reflect any increase or decrease in the number of
issued shares of Common Stock resulting from a stock split, a consolidation
of shares, the payment of a stock dividend, or any other capital adjustment
affecting the number of issued shares of Common Stock. In the event that the
outstanding shares of Common Stock shall be changed into or exchanged for a
different number or kind of shares of stock or other securities of the
Company or another corporation, whether through reorganization,
recapitalization, merger, consolidation, or otherwise, then there shall be
substituted for each share of Common Stock reserved for issuance under the
Plan but not yet purchased by Participants, the number and kind of shares of
stock or other securities into which each outstanding share of Common Stock
shall be so changed or for which each such share shall be exchanged.

                                   ARTICLE IV
                               PAYROLL DEDUCTIONS

    SECTION 4.1.  PAYROLL DEDUCTION ELECTIONS.  Any Employee eligible to
participate in the Plan may elect to have the Company deduct from the
Compensation payable to such Employee during each Offering Period any amount
between one percent (1%) and fifteen percent (15%) of such Participant's
Compensation, in whole multiples of one percent (1%). Such election shall be
made during the thirty day period preceding the Offering Period to which it
first relates. Such election shall become effective as of the first day of
such Participant's first pay period that begins on or after the first day of
such Offering Period and shall remain effective for each successive pay
period and for each subsequent Offering until changed or terminated pursuant
to this Article IV. The percentage deduction specified by the Participant
will be deducted from each payment of compensation made to the Participant.

    SECTION 4.2.  ELECTION TO INCREASE OR DECREASE PAYROLL DEDUCTIONS.
Subject to Section 4.4, a Participant who has a payroll deduction election in
effect under Section 4.1 may prospectively increase or decrease during an
Offering Period the percentage amount of the deductions being made by the
Company from such Participant's Compensation (including a decrease to zero)
by


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delivering to the Company written direction to make such change. Such change
shall become effective as soon as practicable after the Company's receipt of
such written direction and shall remain in effect until changed or terminated
pursuant to this Article IV. A Participant shall be permitted to increase or
decrease the percentage amount of the deductions being made from such
Participant's Compensation only once during each of the portions of an
Offering Period that ends on a Purchase Date; provided, however, a
Participant may terminate the deductions being made from such Participant's
Compensation at any time during such Offering Period. If a Participant
terminates deductions, such Participant cannot resume deductions during that
Offering Period.

    SECTION 4.3.  TERMINATION OF ELECTION UPON TERMINATION OF EMPLOYMENT. The
termination of employment of a Participant for any reason shall automatically
terminate the election of such Participant to have amounts deducted from such
Participant's Compensation pursuant to this Article IV that is then in
effect. Such termination shall be effective immediately following the pay
period during which such termination of employment occurs, but shall not
affect the deduction from Compensation for that pay period.

    SECTION 4.4.  FORM OF ELECTIONS.  Except as otherwise permitted by the
Company, any election by a Participant regarding participation in or
withdrawal from the Plan or deductions from Compensation pursuant to this
Article IV shall be in writing on a form furnished by the Company for such
purpose and shall be made by having such Participant file such form with the
Company in the manner prescribed from time to time by the Company.

                                   ARTICLE V
              STOCK PURCHASE ACCOUNTS AND PURCHASE OF COMMON STOCK

    SECTION 5.1.  STOCK PURCHASE ACCOUNTS.  A Stock Purchase Account shall be
established and maintained on the books and records of the Company for each
Participant. Amounts deducted from a Participant's Compensation pursuant to
Article IV shall be credited to such Participant's Stock Purchase Account. No
interest or other increment shall accrue or be payable to any Participant
with respect to any amounts credited to such Stock Purchase Accounts. All
amounts credited to such Stock Purchase Accounts shall be withdrawn, paid, or
applied toward the purchase of Common stock pursuant to the provisions of
this Article V.

    SECTION 5.2.  PURCHASE OF COMMON STOCK.

    (a) GENERAL.  As of each Purchase Date, the amount to the credit of a
        Participant in such Participant's Stock Purchase Account shall be used
        to purchase from the Company on such Participant's behalf the largest
        number of whole shares of Common Stock which can be purchased at the
        price determined under Section 3.3 with the amount then credited to
        such Participant's Stock Purchase Account, subject to the limitations
        set forth in Article III on the maximum number of shares of Common
        Stock such Participant may purchase. As of such date, such Participant's
        Stock Purchase Account shall be charged with the aggregate purchase
        price of the shares of Common Stock purchased on such Participant's
        behalf. No brokerage or other fees are to be charged upon a purchase.
        Stock transfer taxes, if any, shall be paid by the Company. The
        remaining balance, if any, credited to such Participant's Stock
        Purchase Account shall be carried forward and used to purchase shares
        of Common Stock on the next succeeding Purchase


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        Date; provided that any excess balance remaining in a Participant's
        Stock Purchase Account after the application of the limitations in
        Section 3.2 shall be refunded to the Participant.

    (b) ISSUANCE OF COMMON STOCK.  The shares of Common Stock purchased for a
        Participant as of a Purchase Date shall be deemed to have been issued by
        the Company for all purposes as of the close of business on such date.
        Prior to such date, none of the rights and privileges of a shareholder
        of the Company shall exist with respect to such shares of Common Stock.
        As soon as practicable after such a Purchase Date the Company shall
        issue and deliver, or shall cause its stock transfer agent to issue and
        deliver, a certificate for the number of shares of Common Stock
        purchased for a Participant, which certificate shall be issued in the
        Participant's name or, if so specified by the Participant, in the name
        of the Participant and such other person as the Participant shall
        designate as joint tenants with right of survivorship. In lieu of
        issuing a certificate, the Company may elect to deliver to the
        Participant a statement which shall indicate the number of shares of
        Common Stock purchased for such Participant and the aggregate number of
        shares of Common Stock held on behalf of such Participant under the
        Plan.

    (c) INSUFFICIENT COMMON STOCK AVAILABLE.  If, as of any Purchase Date, the
        aggregate Stock Purchase Accounts available for the purchase of shares
        of Common Stock pursuant to Section 5.2(a) would purchase a number of
        shares of Common Stock in excess of the number of shares of Common Stock
        then available for purchase under the Plan, (i) the number of shares of
        Common Stock which would otherwise be purchased for each Participant on
        such date shall be reduced proportionately to the extent necessary to
        eliminate such excess, (ii) the remaining balance to the credit of each
        Participant in each such Participant's Stock Purchase Accounts shall be
        distributed to each such Participant, and (iii) the Plan shall terminate
        automatically upon the distribution of the remaining balance in such
        Stock Purchase Accounts.

    SECTION 5.3.  WITHDRAWAL FROM PLAN PRIOR TO PURCHASE OF COMMON STOCK.  In
the event (i) a Participant elects in writing for any reason to withdraw from
the Plan during an Offering Period or (ii) a Participant's employment with
the Company terminates for any reason prior to the end of an Offering Period,
and such Participant (or, if such Participant is deceased, such Participant's
Beneficiary) elects in writing to withdraw from the Plan, then the entire
amount remaining to the credit of Such Participant in such Participant's
Stock Purchase Account shall be distributed to such Participant (or, if such
Participant is deceased, to such Participant's Beneficiary) as soon as
administratively practicable after such termination of employment or
withdrawal (as the case may be). If a Participant (or, if such Participant is
deceased, such Participant's Beneficiary) with the right to do so does not
elect in writing to withdraw from the Plan, the amount to the credit of such
Participant in such Participant's Stock Purchase Account shall be used to
purchase shares of Common Stock for such Participant as of the last day of
such Offering Period to the extent provided in Section 5.2(a), and the
remaining balance in such Participant's Stock Purchase Account shall be
distributed to such Participant as soon as administratively practicable.

                                   ARTICLE VI
                                   COMMITTEE

    SECTION 6.1.  POWERS OF THE COMMITTEE.  The Committee shall administer
the Plan. The Committee shall have all powers necessary to enable it to carry
out its duties under the Plan properly. Not in limitation of the foregoing,
the Committee shall have the power to construe and interpret the Plan and


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to determine all questions that shall arise thereunder. The decision of the
Committee upon all matters within the scope of its authority shall be final
and conclusive on all persons, except to the extent otherwise provided by law.

    SECTION 6.2.  INDEMNIFICATION OF THE COMMITTEE.  The Company agrees to
indemnify and hold harmless the members of the Committee against any
liabilities, loss, costs, or damage that they may incur in acting as such
members and to assume the defense of any and allocations, suits, or
proceedings against the members of the Committee, to the extent permitted by
applicable law.

                                  ARTICLE VII
                           AMENDMENT AND TERMINATION

    SECTION 7.1.  AMENDMENT OF THE PLAN.  The Company expressly reserves the
right, at any time and from time to time, to amend in whole or in part any of
the terms and provisions of the Plan; provided, however, no amendment may
without the approval of the shareholders of the Company increase the number
of shares of Common Stock reserved under the Plan.

    SECTION 7.2.  TERMINATION OF PLAN.  The Company expressly reserves the
right, at any time and for whatever reason it may deem appropriate, to
terminate the Plan. If not sooner terminated (i) pursuant to the preceding
sentence or (ii) pursuant to Section 5.2(c), the Plan shall continue in
effect through October 1, 2007. Upon any termination of the Plan, the entire
amount credited to the Stock Purchase Account of each Participant shall be
distributed to each such Participant.

    SECTION 7.3.  PROCEDURE FOR AMENDMENT OR TERMINATION.  Any amendment to
the Plan or termination of the Plan may be retroactive to the extent not
prohibited by applicable law. Any amendment to the Plan or termination of the
Plan shall be made by the Company by resolution of the Board of Directors
(subject to Section 7.1) and shall not require the approval or consent of any
Participant or Beneficiary in order to be effective.

                                  ARTICLE VIII
                                 MISCELLANEOUS

    SECTION 8.1.  ADOPTION BY A SUBSIDIARY.  A Subsidiary may, with the
approval of the Board of Directors and the board of directors of such
Subsidiary, elect to adopt the Plan as of a date mutually agreeable to the
Board of Directors and the board of directors of such Subsidiary. Any such
adoption of the Plan by a Subsidiary shall be evidenced by an appropriate
instrument of adoption executed by such Subsidiary.

    SECTION 8.2.  AUTHORIZATION AND DELEGATION TO THE BOARD OF DIRECTORS.
Each Subsidiary which is or hereafter adopts the Plan authorizes the Board of
Directors (i) to amend or terminate the Plan without further action by said
Subsidiary as provided in Article VII and (ii) to perform such other acts and
to do such other things as the Board of Directors is expressly directed,
authorized, or permitted to perform or do as provided herein.

    SECTION 8.3.  TRANSFERABILITY OF RIGHTS.  Rights under the Plan are not
transferable by a Participant other than by will or the laws of descent and
distribution and are exercisable during a Participant's lifetime only by the
Participant.


                                      A-7





    SECTION 8.4.  NO EMPLOYMENT RIGHTS.  Participation in the Plan shall not
give any employee of the Company or any Subsidiary any right to remain
employed or, upon termination of employment, any right or interest in the
Plan, except as expressly provided herein.

    SECTION 8.5.  COMPLIANCE WITH LAW.  No shares of Common Stock shall be
issued under the Plan prior to compliance by the Company to the satisfaction
of its counsel with any applicable laws.

    SECTION 8.6.  APPROVAL OF PLAN.  The effectiveness of this Plan is
subject to its approval and ratification on or before December 31, 1992 by
the stockholders of the Company. In the event that the Plan is not so
approved, all amounts deducted from the Compensation of Participants and
credited to each Participant's Stock Purchase Account shall be refunded to
each such Participant without interest as soon as administratively
practicable.

    SECTION 8.7.  CONSTRUCTION.  Article, Section, and paragraph headings
have been inserted in the Plan for convenience of reference only and are to
be ignored in any construction of the provisions hereof. If any provision of
the Plan shall be invalid or unenforceable, the remaining provisions shall
nevertheless be valid, enforceable, and fully effective. It is the intent
that the Plan shall at all times constitute an "employee stock purchase plan"
within the meaning of Section 423(b) of the Code, and the Plan shall be
construed, and interpreted to remain such. The Plan shall be construed,
administered, regulated, and governed by the laws of the United States to the
extent applicable, and to the extent such laws are not applicable, by the
laws of the Commonwealth of Massachusetts. Without limiting the foregoing,
all Participants for an Offering Period shall have the same rights and
privileges with respect to their rights to acquire Common Stock under the
Plan for such period, subject to the express terms hereof.


                                      A-8